PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g60140.1.p
Common NameBRADI_1g60140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 527aa    MW: 55238.5 Da    PI: 6.793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g60140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1732.2e-531445212374
              GRAS   2 velLlecAeavssgdlelaqalLarlselas.pdgdpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaalkl..... 83 
                       ++lL  cA av++++l+++q+l   l elas ++gd+++Rlaay ++AL+ rl    ++  ++a+++ +   +         +a  ++     
  Bradi1g60140.1.p 144 EQLLSPCAVAVEARNLSRVQHLFYVLGELASfSSGDANHRLAAYGLRALSLRLPAaVGPAAAAAVRVPALGAECpssfA---AAEPRVfrasl 233
                       68999************************772567******************99667777777766666544443332...22222233366 PP

              GRAS  84 ..fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg......skeeleetger 164
                         f+evsP++ + + +aN aI + + ++  + +  +D ++s+G+QWp+Ll++L+  p  + pps+R+T+v++++++       +      +  
  Bradi1g60140.1.p 234 irFHEVSPWFALPNALANAAIAQQLLQApgRPLSLVDVGVSHGVQWPTLLESLTRLPagRAPPSVRLTVVSAAAATraapfsASPPGYDFAPH 326
                       89***********************99998899*********************999767799*********9888899998888899999** PP

              GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv.lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFl 254
                       L ++A+++++++++         dl+  +  + ++Eal+V +  ++l ++       ++er+evL+ v++l+P++vv++e ++    +s+  +
  Bradi1g60140.1.p 327 LLRYAKSINLDLHIAR-----AGDLS-AQ--LGEEEALVVVCLqFRLGHVA------PEERTEVLRKVRDLKPDLVVLSELDVVVggGSAGAA 405
                       ***********99986.....56663.33..46788887776615555554......556899*******************7765588899* PP

              GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                        +f+  le  + +++s++a +   + e+r+ +E+e  g     ++++  +      e  e Wr+r+++aGF++++++ +a+++a++llrk++ 
  Bradi1g60140.1.p 406 GEFSARLELLWRFLESTSAAFKGRDgEDRRLMEAE-AGAP-AGMITAPASG-----EGREAWRDRMRAAGFQEAAFGGEAVESARSLLRKYDs 491
                       *****************66665555499******9.4444.5566665555.....68889*******************************5 PP

              GRAS 346 sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                       ++++    + +++v l Wk++p+ ++S Wr
  Bradi1g60140.1.p 492 GWEMAGAASGAAAVaLRWKGQPVSFCSLWR 521
                       555555566666667**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.22117499IPR005202Transcription factor GRAS
PfamPF035147.7E-51144521IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKAMDYHEPD EQELTTAVTA IADGGGLDWL EDSISLLSAD GDLSGSYGWW CDPPLLPAQQ  60
DDIGIVVAQT LPPPAALTTT GSPPTSIASP APASSKKRKS SPASGHSGGG SQRRRAEQER  120
ERPAGGGGKK KGGGSDCREA RWAEQLLSPC AVAVEARNLS RVQHLFYVLG ELASFSSGDA  180
NHRLAAYGLR ALSLRLPAAV GPAAAAAVRV PALGAECPSS FAAAEPRVFR ASLIRFHEVS  240
PWFALPNALA NAAIAQQLLQ APGRPLSLVD VGVSHGVQWP TLLESLTRLP AGRAPPSVRL  300
TVVSAAAATR AAPFSASPPG YDFAPHLLRY AKSINLDLHI ARAGDLSAQL GEEEALVVVC  360
LQFRLGHVAP EERTEVLRKV RDLKPDLVVL SELDVVVGGG SAGAAGEFSA RLELLWRFLE  420
STSAAFKGRD GEDRRLMEAE AGAPAGMITA PASGEGREAW RDRMRAAGFQ EAAFGGEAVE  480
SARSLLRKYD SGWEMAGAAS GAAAVALRWK GQPVSFCSLW RPAPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1417352132375GRAS family transcription factor containing p
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126133GGKKKGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751807.10.0PREDICTED: nodulation-signaling pathway 1 protein
TrEMBLA0A0Q3HFK90.0A0A0Q3HFK9_BRADI; Uncharacterized protein
STRINGBRADI1G60140.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-72GRAS family protein